PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00080435001
Common NameGSBRNA2T00080435001, LOC106449332
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family bHLH
Protein Properties Length: 262aa    MW: 29750.9 Da    PI: 8.4913
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00080435001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.52.7e-1473125155
                          CHHHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   1 rrrahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          +r++h e+Er+RR+++ s f  Lr +lP       ++K s ++ + +Av+YIk+L+
  GSBRNA2T00080435001  73 KRAKHREIERQRRQEVTSLFKHLRYILPAqY---VKGKRSSSDHVNEAVNYIKDLE 125
                          79***************************66...9******************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.72E-1070129No hitNo description
SuperFamilySSF474591.57E-1470145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.52272124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1273125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-1173142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.006178130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MAFPSSSSFT NDFAYENELD FSSLLTPSTF ISFQDPNPSN PIIHNTENGG RQRIRETTVT  60
DETPREDVEP KNKRAKHREI ERQRRQEVTS LFKHLRYILP AQYVKGKRSS SDHVNEAVNY  120
IKDLEKKIKE VSKKRDRIKR SITHPPSAGY CPIRSLAASC SSPSSLSSYC SCVGDTHIDF  180
KVMTCLVGIE VVASCCFRHE SCLSSVLQLL VHEQCFNVVS CISTRLHLRF IHTIVCEVEK  240
GIEINFSELQ EKIIKMGRHR A*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17284KRAKHREIERQRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013584847.10.0PREDICTED: transcription factor bHLH55-like
RefseqXP_013746565.10.0PREDICTED: transcription factor bHLH55
SwissprotQ9LN951e-124BH055_ARATH; Transcription factor bHLH55
TrEMBLA0A078JTU30.0A0A078JTU3_BRANA; BnaCnng60760D protein
TrEMBLA0A0D3C9L60.0A0A0D3C9L6_BRAOL; Uncharacterized protein
STRINGBra019773.1-P1e-138(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM62281843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12540.11e-118bHLH family protein
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]